This tool may be used for estimating the risks associated with classrooms of different sizes. UCSF COVID-19 Patient Data for Research is Now Available April 15, 2020 As many researchers at UCSF community are looking to conduct research on COVID-19, we would like to let you know of a resource that can help you gain timely access to the UCSF COVID-19 patient data in our electronic health record (APeX). UCSF scientists have launched Covidseeker, a study that invites the public to contribute the location data that Google collects from their mobile devices as part of an effort to improve contact tracing and help scientists understand how COVID-19 spreads. All patients who start high-flow oxygen (WHO COVID-19 level 5; > 6L oxygen by nasal prongs or mask) will be entered in an observational registry which will only require extraction of medical record data. This visualization shows the impact of intervention strategies and their combinations on the spread of COVID-19. 2019 Novel Coronavirus Visual Dashboard operated by the Johns Hopkins University Center for Systems Science and Engineering (JHU CSSE). January 21, 2021: New FAQs for UCSF Health patients about getting the COVID-19 vaccine. As many researchers at UCSF community are looking to conduct research on COVID-19, we would like to let you know of a resource that can help you gain timely access to the UCSF COVID-19 patient data in our electronic health record (APeX). A searchable dataset of over 65,000 scholarly articles about COVID-19 and the coronavirus family of viruses. covid-19 UCSF Research Shows Industries in Which Workers Are Most Likely to Die From COVID By Sergio Quintana • Published January 24, 2021 • Updated on January 24, 2021 at 1:06 am The CDC estimated that 299,028 excess deaths occurred in the United States between January 26 and October 3, with the highest burden of excess deaths among adults age 25-44 years and the Hispanic/Latinx population. Work is currently underway to create a dataset of COVID-19 patients from Zuckerberg San Francisco General Hospital (ZSFG). Basic data will be assembled for each patient (such as ventilatory status and survival). The criteria for identifying COVID-19 patients is the same across UCSF for all reporting and is determined by the UCSF Medical Center. Data are an important tool to help San Franciscans see the whole picture of coronavirus in our community. Explore resources and guidance in support of diversity, equity, and inclusion during the COVID-19 crisis. UC Health EVP Carrie Byington requested UC BRAID, in coordination with the UC Health Data Warehouse (UCHDW) team, to accelerate the creation of a COVID Research Data Set (CORDS). Data and reports from the city of San Francisco related to COVID-19 including cases and deaths, demographics, lab testing, hospitalizations, and hospital capacity. If you are a UCSF patient, find more FAQs on the Patient Hub . Login to access the UCSF COVID-19 Data Mart Wiki. This UCSF COVID-19 Research Data Mart includes data extracts from the UCSF Electronic Health Record System (APeX) for patients who were tested for COVID-19 with either positive or negative results. This is an international pediatric and adult database to monitor and report outcomes of COVID-19 occurring in hidradenitis suppurativa (HS) patients. It is a collaboration of the COVID Tracking Project and the Antiracist Research & Policy Center. University of California San Francisco; Give to UCSF; UCSF’s innovative, collaborative approach to patient care, research and education spans disciplines across the life sciences, making it a world leader in scientific discovery and its translation to improving health. Most current research points to higher COVID-19 infection rates among Black people in the U.S. Want access to electronic health record data on UCSF COVID-19 patients? Online portal for COVID-19 modeling research, Search, retrieve, and analyze SARS-CoV-2 GenBank data. San Francisco COVID-19 Data Data and reports from the city of San Francisco related to COVID-19 including cases and deaths, demographics, lab testing, hospitalizations, and hospital capacity. Register your request for data access by submitting a request with the CTSI ". Submit a study proposal to the IRB, Step 2. (IRB #20-30545, COVID-19 collaborative study for prospective and retrospective computational analysis). The Broad Terra cloud workspace combines raw COVID-19 sequencing data with workflows and Jupyter Notebooks, Human transcriptional responses to SARS-CoV-2 infection from NCBI Geo, A dataset of over 100 million tweets related to COVID-19, A data collection focusing on the social, behavioral, public health, and economic impact of the novel coronavirus global pandemic from the Inter-university Consortium for Political and Social Research (ICPSR). UCSF investigators worked with colleagues around the world to establish the COVID-19 Global Rheumatology Alliance registry (rheum-covid.org) to create an open platform for rapid data collection and dissemination during the pandemic. The recent data on safety and efficacy of three of the COVID-19 vaccines indicate that some of us will make that decision soon. UCSF Medical Center tests all incoming patients for COVID, whether they have symptoms or not, and Wachter has used that data to put together probabilities. Data powers UCSF work in healthcare, research, education and administration. UCSF Partnership to Guide State COVID-19 Response. Once you have IRB approval, register your request. For collaborations using imaging, please send email to [email protected], ©2021 The Regents of the University of California, UCSF COVID-19 Electronic Health Record Data For Research. COVID: UCSF Infectious Disease Expert Says Indefinite Stay-at-Home Order Wrong Call, Not Data-Driven By Betty Yu January 3, 2021 at 5:55 am Filed Under: Coronavirus , COVID … UCSF is committed to providing a safe and healthy environment for our employees, learners, patients and families. But with COVID-19, we’re learning that kids aren’t as infectious as adults are. UCSF COVID-19 Research Data Mart includes data extracts from the UCSF Electronic Health Record System (APeX) for patients who were tested for COVID-19 with either positive or negative results. This is a guide to research resources for the novel coronavirus COVID-19 curated by the UCSF Library. San Francisco’s response to the coronavirus emergency is grounded in data, science and facts. UC-Wide COVID Research Data Set (CORDS). This dashboard from non-profit journalism site CalMatters covers CA Covid-19 cases, deaths, testing, and state supplies. UCSF has created an interactive tool to allow users to estimate the likelihood that a child in any county of the United States may have asymptomatic COVID-19. UCSF Coronavirus & COVID-19 Research From CTSI, Open Proposals is an invitation to contribute to team discussions on Coronavirus and COVID-19 related research at UCSF. It can help us all do our part and see over time how the situation is … For collaborations using imaging, please send email to, EDRP for Clinical and Quality Initiatives, Instructions for Staff Providing Clinical Data, 2018 Clinical Data Colloquium for Researchers, Login to the wiki for more detailed instructions, Login to access the UCSF COVID-19 Data Mart Wiki, instructions for IRB application submission. Open access research articles, software, presentations, and datasets related to COVID-19. When UCSF wanted to look into COVID-19 disparities in the Black community, they tapped Dr. Kim Rhoads. Description: UCSF has several data sources available for COVID-19 research. This study is conducted in collaboration with multiple academic institutions and community partners that serve diverse AAPIs. This is a UCSF-only forum. The dashboard below provides data on COVID-19 testing and positive cases within the UCSF community. The dashboard provides data on COVID-19 testing and positive cases within the UCSF community. Spreadsheet of over 200 datasets related to COVID-19 pulled from related articles in the Dimensions database, Research datasets, preprints, and figures related to COVID-19, A guide to COVID-19 research resources and datasets, COVID-19 Research and Information Resources, STAT's COVID-19 Drugs and Vaccines Tracker, Impact of COVID-19 Intervention Strategies, COVID-19 Hospital Impact Model for Epidemics (CHIME), Zenodo Coronavirus Disease Research Community, CAS COVID-19 Antiviral Candidate Compound Database, COVID-19 Open Articles Research Dataset (CORD-19). Available to UCSF faculty, staff and students without IRB. Interactive population health mapping website that curates publicly available data and visualizes it at the census tract level. COVID-19 Data and Reports. Scientists at UC San Francisco are inviting the public to contribute the location data that Google collects from their mobile devices to a new study called Covidseeker, which aims to improve contact tracing efforts and help scientists understand how the coronavirus is … To make sure a vaccine is safe for everyone, I’d personally feel most comfortable with six months of data from phase III testing * . The underlying data is available for download. This website works best with modern browsers such as the latest versions of Chrome, Firefox, Safari, and Edge. STAT's guide to some of the most talked-about efforts to treat or prevent coronavirus infection, with details on the science, history, and timeline for each endeavor. For more details on access and the data:  visit the Wiki  and see slides from the Research Data Series webinar. You must submit your own IRB for "Records Review." The wiki has FAQs, more details about the specifics of this Research Data Mart, instructions for IRB application submission, and many other support resources and links. These charts from the Institute for Health Metrics and Evaluation show projected hospital resource use based on COVID-19 deaths. Data related to COVID-19 testing and positive case at UCSF are available on the UCSF COVID-19 Dashboard. COMPASS stands for “COVID-19 Effects on the Mental and Physical Health of Asian Americans & Pacific Islanders Survey Study (COMPASS)". Includes regularly updated information on COVID-19 data in California. Comparative/control data for patients not tested for COVID-19. This will facilitate access for other researchers who would like access to these identified data for research. This tool was developed by Predictive Healthcare at Penn Medicine to assist hospitals and public health officials with hospital capacity planning. The tool is based on work done at UCSF headed by Dr. Dylan Chan, of the Department of Otolaryngology-Head and Neck Surgery and Ana Marija Sola of the UCSF School of Medicine, in collaboration with pediatric COVID-19 California Dashboard A collaboration between researchers at Berkeley, University of Illinois, and Georgia Tech. Researchers interested in funding opportunities related to COVID-19 should check out this website from the UCSF Research Development Office The goal is to align our collective efforts to address the pandemic by creating a centralized, secure research data set and then facilitating access to this data set at the local level. CDC: COVID-NET: A Weekly Summary of U.S. COVID-19 Hospitalization Data CDC: National Center for Health Statistics: Provisional Death Counts for Coronavirus Disease (COVID-19) COVIDMINDER: reveals the regional disparities in outcomes, determinants, and mediations of the COVID-19 pandemic. A “model of models” that contains assessments of the spread of COVID-19, short-term forecasts of disease trends, and scenarios of the course of the disease from modeling groups across the country. We will use these data to better understand risk of infection and clinical course, track outcomes, and inform HS management in the setting of COVID-19. The information is updated regularly by UCSF Occupational Health and Student Health Services and represents the results of symptomatic and surveillance testing performed on students, campus employees who work in non-clinical settings, employees who work in clinical settings at UCSF … A NYTimes dashboard of COVID-19 cases in the United States, at the state and county level. PRIORITY (Pregnancy CoRonavIrus Outcomes RegIsTrY) is a prospective cohort study of pregnant and recently pregnant women who are: either patients under investigation for COVID-19 or a confirmed case of COVID-19. Utilizing Imaging Data for COVID-19 related research is being coordinated by Radiology and Biomedical Imaging. SARS-CoV-2 sequences currently listed in GenBank and the Sequence Read Archive. Data extracts from the UCSF Electronic Health Record System (APeX) include patients who have been tested for or diagnosed with COVID-19. If you do not require identified data, there are other options: 1) studies using "Limited Data" sets can qualify for Exempt review (see definition of "Limited Data") and 2) studies that can be done with completely de-identified data do not require IRB review under the 2018 Revised Common Rule. Statement on COVID-19 and Anti-Asian Racism Racial Equity in Online Environments UC Equity & Inclusion Guidance During COVID-19 COVID-19 Resources in Multiple Languages Remote Resources for those Who Experience Interpersonal Violence COVID-19 - Racial Equity & Social We are managing a UCSF COVID-19 Research Data Mart with IRB approval (IRB #20-30545, COVID-19 collaborative study for prospective and retrospective computational analysis). Currently the guide contains links to openly accessible research datasets, literature collections, and patient resources related to COVID-19.. Pediatric COVID Risk Calculator We have developed an online tool to help determine the risk of asymptomatic infection with SARS-CoV-2, the virus that causes COVID-19. see slides from the Research Data Series webinar. Full data is, US COVID-19 testing data by state - includes positive and negative tests, pending tests, and number of people tested. Depending on your study's requirements, you will either need to simply complete the terms of use for access to the UCSF COVID-19 Research Data Mart or meet with a consultant to assist you with your data needs. Over 8.9 million cases of COVID-19 have been reported and more than 229,000 people have died due to COVID-19, although the true toll is certainly higher. People who have had COVID-19 may develop some immunity against the coronavirus, but this immunity is highly variable and may not last long. Sign up to receive alerts by text message: Text 333 111 and enter “UCSF” January 21, 2021: Chief Clinical Officer Josh Adler shares further rollout of vaccine to new populations and notes short supply. This UCSF COVID-19 Research Data Mart includes data extracts from the UCSF Electronic Health Record System (APeX) for patients who were tested for COVID-19 with either positive or negative results. The partnership between UCSF, Fortanix, Microsoft, and Intel aims to overcome the data privacy issues that inhibit the development of the broad data sets necessary for … The Butte Lab at UCSF has partnered with Paul Bleicher MD, PhD, former CEO of OptumLabs, to calculate and visualize COVID-19 statistics for every county in the United States. CAS has built an open source dataset assembled from CAS REGISTRY® including known anti-viral drugs and related chemical compounds that are structurally similar to known antivirals. It will be updated regularly. A network of infectious disease epidemiologists working with technology companies to use aggregated mobility data to support the COVID-19 response. IRB has established a COVID-19 Rapid Review Team and most reviews take under a week. Presented by: Eugenia Rutenberg and Dima Lituiev Description: UCSF has several data sources available for COVID-19 research.In this session, we will review the data sources -- including UCSF COVID-19 Data Mart, UC-wide CORDS data, and de-identified data for research. UCSF study ranks deadliest jobs during the COVID-19 pandemic ... Yuli Edelstein, the Israeli health minister, told The Andrew Marr Show on Sunday that the data from their vaccination programme suggests a first dose offered around 30 per cent protection from coronavirus. Check back for more details soon. Note that link requires UCSF login. The vaccine can help protect against COVID-19 re-infection. It looks like you're using Internet Explorer 11 or older. Latest Updates. This UCSF COVID-19 Research Data Mart includes: Step 1. Share, comment, contribute, and communicate about relevant ideas, plans, and discovery. Utilizing Imaging Data for COVID-19 related research is being coordinated by Radiology and Biomedical Imaging. Participant Recruitment Program Data available for download. The dashboard provides data on COVID-19 testing and positive cases within the UCSF community. Summary data of daily COVID-19 tests across the 5 UC health systems. Includes all global cases. SAN FRANCISCO (KGO) -- On Dec. 31, UCSF'S Dr. Charles Chiu and his colleagues were in a lab when they found what they are calling"L-452R," a California variant of COVID … The Oxford COVID-19 Government Response Tracker (OxCGRT) aims to track and compare government responses to the coronavirus outbreak worldwide rigorously and consistently. In this session, we will review the data sources -- including UCSF COVID-19 Data Mart, UC-wide CORDS data, and de-identified data for research. ZSFG Data. Note that this site may be behind a paywall. BCHSI, CTSI and IT partnered to create a ‘blanket IRB’ that enables access to the UCSF EHR COVID-19 Data. Now available: UCSF COVID-19 Electronic Health Record Data For Research UCSF Research Data Series. 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